BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB022H04LP1|AL427963
(325 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig878 441 e-124
>3x_Contig878
Length = 4897
Score = 441 bits (218), Expect = e-124
Identities = 277/300 (92%), Gaps = 6/300 (2%)
Strand = Plus / Plus
Query: 1 gatcttatagaaaatcagctatacaaagcggaagattcccaattcaatcaatacctagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1607 gatcttatagaaaatcagctatacaaagcggaagattcccaattcaatcaatacctagag 1666
Query: 61 tctgtgacgnacttacagcagcttctagacctttgtaaactttacagaacacttctaaga 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1667 tctgtgacggacttacagcagcttctagacctttgtaaactttacagaacacttctaaga 1726
Query: 121 gcgcacccgtaaatcaagtaaagcagtagaaagaaagaaaaaaaaaaaaaaaswaagaaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1727 gcgcacccgtaaatcaagtaaagcagtagaaagaaagaaaaaaaaaaaaaaactaagaaa 1786
Query: 181 tgsataaagagsagracaaaaaaagaawataaaactagagascaaggagtaggggatggg 240
|| ||| | || |||| ||||||| || ||||||| ||| | ||||||||||||
Sbjct: 1787 tgc-taa--ggcaggacaagaaaagaatatgaaactag---gcaaagggtaggggatggg 1840
Query: 241 ataagarraaagtaaatgaggaactataatgacaccattaacaagatatacacagagtgt 300
||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1841 atatgaggaaagttaatgaggaactataatgacaccattaacaagatatacacagagtgt 1900
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.715 1.33
Gapped
Lambda K H
1.40 0.715 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,450
Number of Sequences: 1807
Number of extensions: 11450
Number of successful extensions: 3151
Number of sequences better than 1.0e-20: 1
length of query: 325
length of database: 10,358,551
effective HSP length: 15
effective length of query: 310
effective length of database: 10,331,446
effective search space: 3202748260
effective search space used: 3202748260
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.3 bits)
S1: 12 (24.8 bits)
S2: 49 (99.6 bits)